#plink --bfile AFFY_IBC_merged_custom_exome_final --transpose --recode --out AFFY_IBC_merged_custom_exome_final
#gzip AFFY_IBC_merged_custom_exome_final.tped
plink --bfile AFFY_IBC_merged_custom_exome_final --keep EURO_samples.txt  --transpose --recode --out EURO_AFFY_IBC_merged_custom_exome_final
gzip EURO_AFFY_IBC_merged_custom_exome_final.tped
#plink --bfile AFFY_IBC_merged_custom_exome_final --keep CHN_samples.txt --transpose --recode --out CHN_AFFY_IBC_merged_custom_exome_final
#gzip CHN_AFFY_IBC_merged_custom_exome_final.tped
#plink --bfile AFFY_IBC_merged_custom_exome_final --keep AFA_samples.txt  --transpose --recode --out AFA_AFFY_IBC_merged_custom_exome_final
#gzip AFA_AFFY_IBC_merged_custom_exome_final.tped
#plink --bfile AFFY_IBC_merged_custom_exome_final --keep  HIS_samples.txt --transpose --recode --out HIS_AFFY_IBC_merged_custom_exome_final
#gzip HIS_AFFY_IBC_merged_custom_exome_final.tped
